ibllib.tests.test_oneibl

Functions

get_mock_session_settings

Create a basic session settings file for testing.

Classes

TestAlyx2Path
TestDataHandlers	Tests for ibllib.oneibl.data_handlers.DataHandler classes.
TestExpectedDataset
TestFTPPatcher
TestGlobusPatcher	Tests for the ibllib.oneibl.patcher.GlobusPatcher class.
TestIBLGlobusPatcher	Tests for the ibllib.oneibl.patcher.IBLGlobusPatcher class.
TestRegistration
TestSDSCDataHandler	Test for SDSCDataHandler class.
TestUtils	Test helper functions in ibllib.oneibl.registration module.

class TestUtils(methodName='runTest')

Bases: TestCase

Test helper functions in ibllib.oneibl.registration module.

test_get_lab()

Test ibllib.oneibl.registration.get_lab function.

class TestFTPPatcher(methodName='runTest')

Bases: TestCase

setUp() → None

Hook method for setting up the test fixture before exercising it.

reset_params()

Remove the FTP parameters from the AlyxClient

test_setup(_)

static mock_input(prompt)

class TestGlobusPatcher(methodName='runTest')

Bases: _GlobusPatcherTest

Tests for the ibllib.oneibl.patcher.GlobusPatcher class.

patcher_class

alias of GlobusPatcher

setUp() → None

Hook method for setting up the test fixture before exercising it.

test_patch_datasets()

Tests for GlobusPatcher.patch_datasets and GlobusPatcher.launch_transfers methods.

class TestIBLGlobusPatcher(methodName='runTest')

Bases: _GlobusPatcherTest

Tests for the ibllib.oneibl.patcher.IBLGlobusPatcher class.

patcher_class

alias of IBLGlobusPatcher

setUp() → None

Hook method for setting up the test fixture before exercising it.

test_delete_datasets()

Tests for IBLGlobusPatcher.delete_datasets method.

class TestAlyx2Path(methodName='runTest')

Bases: TestCase

dset = {'collection': 'alf/probe00', 'file_records': [{'data_repository': 'ibl_floferlab_SR', 'data_repository_path': '/mnt/s0/Data/Subjects/', 'data_url': None, 'exists': True, 'id': 'c9ae1b6e-03a6-41c9-9e1b-4a7f9b5cfdbf', 'relative_path': 'SWC_014/2019-12-11/001/alf/probe00/channels.localCoordinates.npy'}, {'data_repository': 'flatiron_hoferlab', 'data_repository_path': '/hoferlab/Subjects/', 'data_url': 'https://ibl.flatironinstitute.org/hoferlab/Subjects/SWC_014/2019-12-11/001/alf/probe00/channels.localCoordinates.00059298-1b33-429c-a802-fa51bb662d72.npy', 'exists': True, 'id': 'f434a638-bc61-4695-884e-70fd1e521d60', 'relative_path': 'SWC_014/2019-12-11/001/alf/probe00/channels.localCoordinates.npy'}], 'name': 'channels.localCoordinates.npy', 'session': 'https://alyx.internationalbrainlab.org/sessions/7cffad38-0f22-4546-92b5-fd6d2e8b2be9', 'url': 'https://alyx.internationalbrainlab.org/datasets/00059298-1b33-429c-a802-fa51bb662d72'}

test_dsets_2_path()

get_mock_session_settings(subject='clns0730', user='test_user')

Create a basic session settings file for testing.

class TestRegistration(methodName='runTest')

Bases: TestCase

subject = ''

The name of the subject under which to create sessions.

Type:

str

one = None

An instance of ONE connected to a test database.

Type:

one.api.OneAlyx

classmethod setUpClass()

Create a random new subject.

setUp() → None

Hook method for setting up the test fixture before exercising it.

test_registration_datasets()

test_create_sessions()

test_registration_session()

Test IBLRegistrationClient.register_session method.

test_registration_session_passive()

Test IBLRegistrationClient.register_session method when there is no iblrig bpod data.

For truly passive sessions there is no Bpod data (no raw_behavior_data or raw_task_data folders). In this situation the must already be a session on Alyx manually created by the experimenter, which needs to contain the start time, location, lab, and user data.

test_register_chained_session()

Tests for registering a session with chained (multiple) protocols.

tearDown() → None

Hook method for deconstructing the test fixture after testing it.

classmethod tearDownClass() → None

Hook method for deconstructing the class fixture after running all tests in the class.

class TestDataHandlers(methodName='runTest')

Bases: TestCase

Tests for ibllib.oneibl.data_handlers.DataHandler classes.

test_server_upload_data(register_dataset_mock)

A test for ServerDataHandler.uploadData method.

test_getData()

Test for DataHandler.getData method.

test_dataset_from_name()

Test dataset_from_name function.

test_update_collections()

Test update_collections function.

class TestSDSCDataHandler(methodName='runTest')

Bases: TestCase

Test for SDSCDataHandler class.

setUp()

Hook method for setting up the test fixture before exercising it.

test_handler_overwrite()

test_handler()

Test for SDSCDataHandler.setUp and cleanUp methods.

class TestExpectedDataset(methodName='runTest')

Bases: TestCase

setUp()

Hook method for setting up the test fixture before exercising it.

test_and()

Test for ExpectedDataset input with AND operator.

test_or()

Test for ExpectedDataset input with OR operator.

test_xor()

Test for ExpectedDataset input with XOR operator.

test_filter()

Test for ExpectedDataset.filter method.

This test can be extended to support AND operators e.g. (dset1 AND dset2) OR (dset2 AND dset3).

test_identifiers()

Test identifiers property getter.